EVALUATION_BUNDLE_CONTRACT.md
MANIFEST.in
NOTICE.md
PROVENANCE.md
README.md
pyproject.toml
configs/cell_protocol.json
docs/cell.md
docs/export-results.md
docs/fourier.md
docs/her2.md
docs/hest.md
docs/training.md
examples/export_results_example.py
examples/train_mlp.py
examples/bundles/cell.json
examples/bundles/fourier.json
examples/bundles/her2.json
examples/bundles/hest.json
src/stdetail/__init__.py
src/stdetail/__main__.py
src/stdetail/cell_biology.py
src/stdetail/cell_core.py
src/stdetail/cell_prepare.py
src/stdetail/cell_rna.py
src/stdetail/cell_score.py
src/stdetail/evaluation_export.py
src/stdetail/example.py
src/stdetail/export.py
src/stdetail/fourier.py
src/stdetail/her2.py
src/stdetail/her2_core.py
src/stdetail/hest.py
src/stdetail/hest_core.py
src/stdetail.egg-info/PKG-INFO
src/stdetail.egg-info/SOURCES.txt
src/stdetail.egg-info/dependency_links.txt
src/stdetail.egg-info/entry_points.txt
src/stdetail.egg-info/requires.txt
src/stdetail.egg-info/top_level.txt
src/stdetail/training/__init__.py
src/stdetail/training/hest_data.py
src/stdetail/training/non_neighbours.py
src/stdetail/training/adapters/__init__.py
src/stdetail/training/adapters/deepspot2cell/__init__.py
src/stdetail/training/adapters/deepspot2cell/engineering_gate.py
src/stdetail/training/adapters/deepspot2cell/formal_runner.py
src/stdetail/training/adapters/deepspot2cell/graph.py
src/stdetail/training/adapters/deepspot2cell/initialization.py
src/stdetail/training/adapters/deepspot2cell/objective.py
src/stdetail/training/adapters/deepspot2cell/overlay.py
src/stdetail/training/adapters/deepspot2cell/paired_data.py
src/stdetail/training/adapters/hest_deephis2exp/__init__.py
src/stdetail/training/adapters/hest_deephis2exp/batching.py
src/stdetail/training/adapters/hest_deephis2exp/data.py
src/stdetail/training/adapters/hest_deephis2exp/engineering_gate.py
src/stdetail/training/adapters/hest_deephis2exp/export.py
src/stdetail/training/adapters/hest_deephis2exp/formal_runner.py
src/stdetail/training/adapters/hest_deephis2exp/models.py
src/stdetail/training/adapters/hest_deephis2exp/objective.py
src/stdetail/training/adapters/hest_deephis2exp/overlay.py
src/stdetail/training/adapters/hest_deephis2exp/split.py
src/stdetail/training/adapters/hest_deepspot_hist/__init__.py
src/stdetail/training/adapters/hest_deepspot_hist/contract.py
src/stdetail/training/adapters/hest_deepspot_hist/data.py
src/stdetail/training/adapters/hest_deepspot_hist/deepspot.py
src/stdetail/training/adapters/hest_deepspot_hist/engineering_gate.py
src/stdetail/training/adapters/hest_deepspot_hist/formal_runner.py
src/stdetail/training/adapters/hest_deepspot_hist/hist.py
src/stdetail/training/adapters/hest_deepspot_hist/manifest.py
src/stdetail/training/adapters/hest_deepspot_hist/objective.py
src/stdetail/training/adapters/hest_deepspot_hist/outputs.py
src/stdetail/training/adapters/hest_deepspot_hist/paired.py
src/stdetail/training/adapters/hest_egn_tcgn/__init__.py
src/stdetail/training/adapters/hest_egn_tcgn/contracts.py
src/stdetail/training/adapters/hest_egn_tcgn/engineering_gate.py
src/stdetail/training/adapters/hest_egn_tcgn/exemplars.py
src/stdetail/training/adapters/hest_egn_tcgn/hest_data.py
src/stdetail/training/adapters/hest_egn_tcgn/model_inputs.py
src/stdetail/training/adapters/hest_egn_tcgn/outputs.py
src/stdetail/training/adapters/hest_egn_tcgn/overlay.py
src/stdetail/training/adapters/hest_egn_tcgn/pairing.py
src/stdetail/training/adapters/hest_egn_tcgn/train_pair.py
src/stdetail/training/adapters/hest_egn_tcgn/training.py
src/stdetail/training/adapters/hest_egn_tcgn/upstream.py
src/stdetail/training/adapters/hest_thitogene/__init__.py
src/stdetail/training/adapters/hest_thitogene/engineering_gate.py
src/stdetail/training/adapters/hest_thitogene/hest_data.py
src/stdetail/training/adapters/hest_thitogene/overlay.py
src/stdetail/training/adapters/hest_thitogene/train_pair.py
src/stdetail/training/adapters/hest_thitogene/upstream.py
src/stdetail/training/adapters/ridge_mlp/__init__.py
src/stdetail/training/adapters/ridge_mlp/hest_contract.py
src/stdetail/training/adapters/ridge_mlp/model.py
src/stdetail/training/adapters/ridge_mlp/ridge.py
src/stdetail/training/adapters/ridge_mlp/train_pair.py
src/stdetail/training/adapters/scellst/__init__.py
src/stdetail/training/adapters/scellst/data.py
src/stdetail/training/adapters/scellst/engineering_gate.py
src/stdetail/training/adapters/scellst/formal_runner.py
src/stdetail/training/adapters/scellst/lightning_overlay.py
src/stdetail/training/adapters/scellst/objective.py
src/stdetail/training/adapters/scellst/runtime.py
src/stdetail/training/adapters/scellst/split.py
src/stdetail/training/shared/__init__.py
src/stdetail/training/shared/adjacency.py
src/stdetail/training/shared/losses.py
src/stdetail/training/shared/noop.py
tests/test_cell.py
tests/test_core.py
tests/test_evaluation_export.py
tests/test_fourier.py
tests/test_her2.py
tests/test_training.py