Examples Analyze data User guide

Analyze data

Compare predictions with measured RNA gene by gene, or open results from the STDetail package.

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Results computed with the Python package open here. How to compute them

Choose a results file

Browse examples

Examples: the score table behind Figure 6a,b (11 models, 9 HEST specimens) and a full analysis of one lung section.

Download example files

Results fileCSV or TSV scores up to 2 MB, or JSON bundles up to 64 MB

Drop your file hereor use the file picker

File formats

Score tables (CSV or TSV, up to 500 rows) have one row per model, task and specimen or patient. Evaluation bundles (JSON, up to 100,000 rows) hold the scores of any workflow with their definitions. Analysis bundles (JSON) add band scores, expression and coordinates, so maps can be drawn.

Score table columnsAnalysis bundles

Generated test bundles

Simulated output of the HEST, HER2, Fourier and cell workflows, for checking that package files open here.

Choose a JSON, CSV or TSV file above.

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